UniProt P0AAB5
3-octaprenyl-4-hydroxybenzoate carboxy-lyase (P0AAB5)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase (UniProt P0AAB5), EC 4.1.1.98: 8 experimental structures and 1 predicted model on GenesisL1, 5 ligands bound, 55 pockets. Binding sites, druggability and experiment against prediction…
- UniProt
- P0AAB5
- Protein
- 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
- EC
- 4.1.1.98
- Experimental structures
- 8
- Predicted models
- 1
- Ligands
- 5
- Pockets
- 55 · 4 records with a druggable one
Structures
9 records of P0AAB5 in the MolNFT archive: 8 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5M1B | Crystal structure of C-terminally tagged apo-UbiD from E. coli | x-ray diffraction | A, B, C | — | — |
| 5M1B | Crystal structure of C-terminally tagged apo-ubid from E. COLI | x-ray diffraction | A, B, C | — | — |
| 5M1C | Crystal structure of N-terminally tagged apo-UbiD from E. coli | x-ray diffraction | A, B, C | — | 16 (best 0.81) |
| 5M1C | Crystal structure of N-terminally tagged apo-ubid from E. COLI | x-ray diffraction | A, B, C | — | — |
| 5M1D | Crystal structure of N-terminally tagged UbiD from E. coli reconstituted with prFMN cofactor | x-ray diffraction | A, B, C | MN, 4LU, NA, SO4 | 17 (best 0.85) |
| 5M1D | Crystal structure of N-terminally tagged ubid from E. COLI reconstituted with prfmn cofactor | x-ray diffraction | A, B, C | MN, 4LU, NA, SO4 | — |
| 5M1E | Crystal structure of N-terminally tagged UbiD from E. coli reconstituted with prFMN cofactor | x-ray diffraction | A, B, C | MN, 7D9, NA | 18 (best 0.84) |
| 5M1E | Crystal structure of N-terminally tagged ubid from E. COLI reconstituted with prfmn cofactor | x-ray diffraction | A, B, C | MN, 7D9, NA | — |
| P0AAB5 | AlphaFold monomer V2.0 prediction for 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (P0AAB5) | predicted | A | — | 4 (best 0.85) |
Ligands
- MN · Manganese (II) ion · in 4 records
- NA · Sodium ion · in 4 records
- 4LU · 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-yl)-D-ribitol · in 2 records
- 7D9 · (16~{R})-11,12,14,14-tetramethyl-3,5-bis(oxidanylidene)-8-[(2~{S},3~{S},4~{R})-2,3,4-tris(oxidanyl)-5-phosphonooxy-pentyl]-1,4,6,8-tetrazatetracyclo[7.7.1.0^{2,7}.0^{13,17}]heptadeca-2(7),9(17),10,12-tetraene-16-sulfonic acid · in 2 records
- SO4 · Sulfate ion · in 2 records
Experiment against prediction
- 5M1E chain C against the predicted model P0AAB5: TM-score 0.97, RMSD 1.43 Å
- 5M1E chain C against the predicted model P0AAB5: TM-score 0.97, RMSD 1.43 Å
- 5M1D chain C against the predicted model P0AAB5: TM-score 0.97, RMSD 1.42 Å
- 5M1D chain C against the predicted model P0AAB5: TM-score 0.97, RMSD 1.42 Å
- 5M1C chain C against the predicted model P0AAB5: TM-score 0.97, RMSD 1.48 Å
- 5M1C chain C against the predicted model P0AAB5: TM-score 0.97, RMSD 1.48 Å
- 5M1C chain B against the predicted model P0AAB5: TM-score 0.95, RMSD 2.11 Å
- 5M1C chain B against the predicted model P0AAB5: TM-score 0.95, RMSD 2.11 Å
- 5M1B chain B against the predicted model P0AAB5: TM-score 0.95, RMSD 2.15 Å
- 5M1B chain B against the predicted model P0AAB5: TM-score 0.95, RMSD 2.15 Å
Elsewhere
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