UniProt P00165
Cytochrome b6 (P00165)
Cytochrome b6 (UniProt P00165): 7 experimental structures and 1 predicted model on GenesisL1, 13 ligands bound, 96 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P00165
- Protein
- Cytochrome b6
- Experimental structures
- 7
- Predicted models
- 1
- Ligands
- 13
- Pockets
- 96 · 6 records with a druggable one
Structures
8 records of P00165 in the MolNFT archive: 7 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 6RQF | 3.6 Angstrom cryo-EM structure of the dimeric cytochrome b6f complex from Spinacia oleracea with… | electron microscopy | I, A | HEM, HEC, CLA, BCR, PL9, 6PL | 13 (best 0.87) |
| 6RQF | 3.6 ångström cryo-EM structure of the dimeric cytochrome B6F complex from spinacia oleracea with… | electron microscopy | I, A | HEM, HEC, CLA, BCR, PL9, 6PL | — |
| 7QRM | Cryo-EM structure of catalytically active Spinacia oleracea cytochrome b6f in complex with… | electron microscopy | A, I | HEM, HEC, CLA, PL9, UMQ, PGT | 16 (best 0.89) |
| 7ZYV | Cryo-EM structure of catalytically active Spinacia oleracea cytochrome b6f in complex with… | electron microscopy | A, I | HEM, HEC, CLA, UMQ, PL9, BCR | 18 (best 0.88) |
| 9ES7 | Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with water molecules at 1.94 A… | electron microscopy | A, I | HEM, HEC, UMQ, LMG, CLA, BCR | 17 (best 0.89) |
| 9ES8 | Cryo-EM structure of Spinacia oleracea cytochrome b6f with decylplastoqui bound at plastoquionol… | electron microscopy | A, I | HEM, HEC, A1H65, LMG, CLA, UMQ | 15 (best 0.91) |
| 9ES9 | Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with inhibitor DBMIB bound at… | electron microscopy | A, I | HEM, HEC, UMQ, LMG, BNT, CLA | 17 (best 0.87) |
| P00165 | AlphaFold monomer V2.0 prediction for cytochrome B6 (P00165) | predicted | A | — | — |
Ligands
- BCR · Beta-carotene · in 7 records
- CLA · Chlorophyll A · in 7 records
- HEC · Heme C · in 7 records
- HEM · Protoporphyrin IX containing Fe · in 7 records
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 5 records
- UMQ · Undecyl-maltoside · in 5 records
- PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone · in 4 records
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 3 records
- 6PL · (4S,7R)-4-hydroxy-N,N,N-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide · in 2 records
- PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate · in 2 records
- A1H65 · Decylplastoquinone · in 1 record
- BNT · 2,5-dibromo-3-isopropyl-6-methylbenzo-1,4-quinone · in 1 record
- PGT · (1S)-2-{[{[(2R)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate · in 1 record
Experiment against prediction
- 6RQF chain I against the predicted model P00165: TM-score 0.98, RMSD 1.11 Å
- 6RQF chain I against the predicted model P00165: TM-score 0.98, RMSD 1.11 Å
- 6RQF chain A against the predicted model P00165: TM-score 0.98, RMSD 1.08 Å
- 6RQF chain A against the predicted model P00165: TM-score 0.98, RMSD 1.08 Å
- 7QRM chain I against the predicted model P00165: TM-score 0.97, RMSD 1.01 Å
- 7QRM chain A against the predicted model P00165: TM-score 0.97, RMSD 1.02 Å
- 7ZYV chain A against the predicted model P00165: TM-score 0.97, RMSD 1.05 Å
- 7ZYV chain I against the predicted model P00165: TM-score 0.97, RMSD 1.05 Å
- 9ES7 chain I against the predicted model P00165: TM-score 0.97, RMSD 1.05 Å
- 9ES7 chain A against the predicted model P00165: TM-score 0.97, RMSD 1.05 Å
Elsewhere
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