UniProt O58429
Nucleoside diphosphate kinase (O58429)
Nucleoside diphosphate kinase (UniProt O58429): 12 experimental structures and 1 predicted model on GenesisL1, 1 pocket. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- O58429
- Protein
- Nucleoside diphosphate kinase
- Experimental structures
- 12
- Predicted models
- 1
- Pockets
- 1 · 0 records with a druggable one
Structures
13 records of O58429 in the MolNFT archive: 12 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2CWK | Crystal structure of nucleotide diphosphate kinase from Pyrococcus horikoshii | x-ray diffraction | A, B | — | — |
| 2CWK | Crystal structure of nucleotide diphosphate kinase from pyrococcus horikoshii | x-ray diffraction | A, B | — | — |
| 2DXD | Crystal structure of nucleoside diphosphate kinase in complex with ATP analog | x-ray diffraction | A, B | — | — |
| 2DXD | Crystal structure of nucleoside diphosphate kinase in complex with ATP analog | x-ray diffraction | A, B | — | — |
| 2DXE | Crystal structure of nucleoside diphosphate kinase in complex with GDP | x-ray diffraction | A, B | — | — |
| 2DXE | Crystal structure of nucleoside diphosphate kinase in complex with GDP | x-ray diffraction | A, B | — | — |
| 2DXF | Crystal structure of nucleoside diphosphate kinase in complex with GTP analog | x-ray diffraction | A, B | — | — |
| 2DXF | Crystal structure of nucleoside diphosphate kinase in complex with GTP analog | x-ray diffraction | A, B | — | — |
| 2DY9 | Crystal structure of nucleoside diphosphate kinase in complex with ADP | x-ray diffraction | A, B | — | — |
| 2DY9 | Crystal structure of nucleoside diphosphate kinase in complex with ADP | x-ray diffraction | A, B | — | — |
| 2DYA | Crystal structure of complex between Adenine nucleotide and nucleoside diphosphate kinase | x-ray diffraction | A, B | — | — |
| 2DYA | Crystal structure of complex between adenine nucleotide and nucleoside diphosphate kinase | x-ray diffraction | A, B | — | — |
| O58429 | AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (O58429) | predicted | A | — | 1 (best 0.44) |
Experiment against prediction
- 2DXF chain A against the predicted model O58429: TM-score 0.96, RMSD 1.20 Å
- 2DXF chain A against the predicted model O58429: TM-score 0.96, RMSD 1.20 Å
- 2CWK chain B against the predicted model O58429: TM-score 0.96, RMSD 1.19 Å
- 2CWK chain B against the predicted model O58429: TM-score 0.96, RMSD 1.19 Å
- 2DXD chain A against the predicted model O58429: TM-score 0.95, RMSD 1.23 Å
- 2DXD chain A against the predicted model O58429: TM-score 0.95, RMSD 1.23 Å
- 2DXF chain B against the predicted model O58429: TM-score 0.95, RMSD 1.25 Å
- 2DXF chain B against the predicted model O58429: TM-score 0.95, RMSD 1.25 Å
- 2DYA chain A against the predicted model O58429: TM-score 0.95, RMSD 1.24 Å
- 2DYA chain A against the predicted model O58429: TM-score 0.95, RMSD 1.24 Å
Elsewhere
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