UniProt D2Z0P5
Photosynthetic reaction center cytochrome c subunit (D2Z0P5)
Photosynthetic reaction center cytochrome c subunit (UniProt D2Z0P5): 8 experimental structures and 1 predicted model on GenesisL1, 8 ligands bound, 10 pockets. Binding sites, druggability and experiment against prediction…
- UniProt
- D2Z0P5
- Protein
- Photosynthetic reaction center cytochrome c subunit
- Experimental structures
- 8
- Predicted models
- 1
- Ligands
- 8
- Pockets
- 10 · 2 records with a druggable one
Structures
9 records of D2Z0P5 in the MolNFT archive: 8 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3WMM | Crystal structure of the LH1-RC complex from Thermochromatium tepidum in C2 form | x-ray diffraction | C | — | — |
| 3WMM | Crystal structure of the LH1-rc complex from thermochromatium tepidum in C2 form | x-ray diffraction | C | — | — |
| 4V8K | Crystal structure of the LH1-RC complex from Thermochromatium tepidum in P21 form | x-ray diffraction | AC, BC | — | — |
| 5B5M | Crystal structure of the Sr-substituted LH1-RC complex from Tch. tepidum | x-ray diffraction | C, o | HEM, SR | 6 (best 0.89) |
| 5B5N | Crystal structure of the Ba-substituted LH1-RC complex from Tch. tepidum | x-ray diffraction | C, o | HEM, BA | 4 (best 0.89) |
| 5Y5S | Structure of photosynthetic LH1-rc super-complex at 1.9 ångström resolution | x-ray diffraction | C | HEC, MG, LHG, PGV | — |
| 7C52 | Co-crystal structure of a photosynthetic LH1-RC in complex with electron donor HiPIP | x-ray diffraction | C | HEM, CA, LHG, PGV | — |
| 7C52 | Co-crystal structure of a photosynthetic LH1-rc in complex with electron donor hipip | x-ray diffraction | C | HEM, CA, LHG, PGV | — |
| D2Z0P5 | AlphaFold monomer V2.0 prediction for photosynthetic reaction center cytochrome C subunit (D2Z0P5) | predicted | A | — | — |
Ligands
- HEM · Protoporphyrin IX containing Fe · in 4 records
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 3 records
- PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate · in 3 records
- CA · Calcium ion · in 2 records
- BA · Barium ion · in 1 record
- HEC · Heme C · in 1 record
- MG · Magnesium ion · in 1 record
- SR · Strontium ion · in 1 record
Experiment against prediction
- 7C52 chain C against the predicted model D2Z0P5: TM-score 1.00, RMSD 0.34 Å
- 7C52 chain C against the predicted model D2Z0P5: TM-score 1.00, RMSD 0.34 Å
- 5Y5S chain C against the predicted model D2Z0P5: TM-score 1.00, RMSD 0.36 Å
- 5B5M chain o against the predicted model D2Z0P5: TM-score 0.99, RMSD 0.53 Å
- 5B5N chain o against the predicted model D2Z0P5: TM-score 0.99, RMSD 0.53 Å
- 5B5N chain C against the predicted model D2Z0P5: TM-score 0.99, RMSD 0.61 Å
- 5B5M chain C against the predicted model D2Z0P5: TM-score 0.99, RMSD 0.62 Å
- 3WMM chain C against the predicted model D2Z0P5: TM-score 0.98, RMSD 1.17 Å
- 3WMM chain C against the predicted model D2Z0P5: TM-score 0.98, RMSD 1.17 Å
- 4V8K chain AC against the predicted model D2Z0P5: TM-score 0.98, RMSD 1.24 Å
Elsewhere
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