UniProt D0VWR1
Photosystem II CP47 reaction center protein (D0VWR1)
Photosystem II CP47 reaction center protein (UniProt D0VWR1): 67 experimental structures and 1 predicted model on GenesisL1, 9 ligands bound, 347 pockets. Binding sites, druggability and experiment against prediction (TM-score)…
- UniProt
- D0VWR1
- Protein
- Photosystem II CP47 reaction center protein
- Experimental structures
- 67
- Predicted models
- 1
- Ligands
- 9
- Pockets
- 347 · 42 records with a druggable one
Structures
68 records of D0VWR1 in the MolNFT archive: 67 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3WU2 | Crystal structure analysis of Photosystem II complex | x-ray diffraction | B, b | BCR, SQD, UNL, CA, CLA, LMG | 8 (best 0.84) |
| 3WU2 | Crystal structure analysis of photosystem II complex | x-ray diffraction | B, b | — | — |
| 4UB6 | Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser | x-ray diffraction | B, b | SQD, CA, CLA, BCR, LMG, UNL | 8 (best 0.84) |
| 4UB6 | Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser | x-ray diffraction | B, b | — | — |
| 4UB8 | Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser | x-ray diffraction | B, b | SQD, CA, CLA, BCR, LMG, UNL | 10 (best 0.83) |
| 4UB8 | Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser | x-ray diffraction | B, b | — | — |
| 5B5E | Crystal structure analysis of photosystem II complex | x-ray diffraction | B, b | — | — |
| 5B66 | Crystal structure analysis of photosystem II complex | x-ray diffraction | B, b | — | — |
| 5GTH | Native XFEL structure of photosystem II (dark dataset) | x-ray diffraction | B, b | SQD, LHG, CLA, BCR, LMG, UNL | 9 (best 0.83) |
| 5GTH | Native xfel structure of photosystem II (dark dataset) | x-ray diffraction | B, b | — | — |
| 5GTI | Native XFEL structure of photosystem II (two flash dataset) | x-ray diffraction | B, b | SQD, LHG, CA, CLA, BCR, LMG | 8 (best 0.81) |
| 5GTI | Native xfel structure of photosystem II (two flash dataset) | x-ray diffraction | B, b | — | — |
| 5V2C | Re-refinement of crystal structure of photosystem II complex | x-ray diffraction | B, b | BCR, SQD, CA, CLA, LMG, LHG | 9 (best 0.82) |
| 5V2C | Re-refinement of crystal structure of photosystem II complex | x-ray diffraction | B, b | SQD, CA, CLA, BCR, LMG, LHG | — |
| 5WS5 | Native XFEL structure of photosystem II (preflash dark dataset) | x-ray diffraction | B, b | SQD, CLA, BCR, LMG, UNL, LHG | 8 (best 0.83) |
| 5WS5 | Native xfel structure of photosystem II (preflash dark dataset) | x-ray diffraction | B, b | SQD, CLA, BCR, LMG, UNL, LHG | — |
| 5WS6 | Native XFEL structure of Photosystem II (preflash two-flash dataset | x-ray diffraction | B, b | SQD, CLA, BCR, LMG, UNL, LHG | 8 (best 0.83) |
| 5WS6 | Native xfel structure of photosystem II (preflash two-flash dataset | x-ray diffraction | B, b | SQD, CLA, BCR, LMG, UNL, LHG | — |
| 6JLJ | XFEL structure of cyanobacterial photosystem II (dark state, dataset1) | x-ray diffraction | B, b | SQD, CA, CLA, BCR, UNL, LHG | 8 (best 0.83) |
| 6JLJ | Xfel structure of cyanobacterial photosystem II (dark state, DATASET1) | x-ray diffraction | B, b | SQD, CA, CLA, BCR, UNL, LHG | — |
| 6JLK | XFEL structure of cyanobacterial photosystem II (1F state, dataset1) | x-ray diffraction | B, b | SQD, CA, CLA, BCR, LMG, UNL | 8 (best 0.83) |
| 6JLK | Xfel structure of cyanobacterial photosystem II (1F state, DATASET1) | x-ray diffraction | B, b | SQD, CA, CLA, BCR, LMG, UNL | — |
| 6JLL | XFEL structure of cyanobacterial photosystem II (2F state, dataset1) | x-ray diffraction | B, b | SQD, CA, CLA, BCR, LMG, UNL | 8 (best 0.83) |
| 6JLL | Xfel structure of cyanobacterial photosystem II (2F state, DATASET1) | x-ray diffraction | B, b | SQD, CA, CLA, BCR, LMG, UNL | — |
| 6JLM | XFEL structure of cyanobacterial photosystem II (dark state, dataset2) | x-ray diffraction | B, b | SQD, CA, CLA, BCR, LMG, UNL | 8 (best 0.83) |
| 6JLM | Xfel structure of cyanobacterial photosystem II (dark state, DATASET2) | x-ray diffraction | B, b | SQD, CA, CLA, BCR, LMG, UNL | — |
| 6JLN | XFEL structure of cyanobacterial photosystem II (1F state, dataset2) | x-ray diffraction | B, b | SQD, CA, CLA, BCR, UNL, LHG | 9 (best 0.83) |
| 6JLN | Xfel structure of cyanobacterial photosystem II (1F state, DATASET2) | x-ray diffraction | B, b | SQD, CA, CLA, BCR, UNL, LHG | — |
| 6JLO | XFEL structure of cyanobacterial photosystem II (2F state, dataset2) | x-ray diffraction | B, b | SQD, CA, CLA, BCR, UNL, LHG | 9 (best 0.83) |
| 6JLO | Xfel structure of cyanobacterial photosystem II (2F state, DATASET2) | x-ray diffraction | B, b | SQD, CA, CLA, BCR, UNL, LHG | — |
| 6JLP | XFEL structure of cyanobacterial photosystem II (3F state, dataset2) | x-ray diffraction | B, b | SQD, CA, CLA, BCR, UNL, DGD | 8 (best 0.83) |
| 6JLP | Xfel structure of cyanobacterial photosystem II (3F state, DATASET2) | x-ray diffraction | B, b | SQD, CA, CLA, BCR, UNL, DGD | — |
| 7CJI | Photosystem II structure in the S1 state | x-ray diffraction | B, b | SQD, LHG, CLA, BCR, UNL, DGD | 8 (best 0.83) |
| 7CJI | Photosystem II structure in the S1 state | x-ray diffraction | B, b | SQD, LHG, CLA, BCR, UNL, DGD | — |
| 7CJJ | Photosystem II structure in the S2 state | x-ray diffraction | B, b | SQD, LHG, CLA, BCR, UNL, DGD | 8 (best 0.83) |
| 7CJJ | Photosystem II structure in the S2 state | x-ray diffraction | B, b | SQD, LHG, CLA, BCR, UNL, DGD | — |
| 7COU | Structure of cyanobacterial photosystem II in the dark S1 state | x-ray diffraction | B, b | SQD, LHG, CLA, BCR, LMG, UNL | 8 (best 0.82) |
| 7COU | Structure of cyanobacterial photosystem II in the dark S1 state | x-ray diffraction | B, b | SQD, LHG, CLA, BCR, LMG, UNL | — |
| 7CZL | Structural insights into a dimeric Psb27-photosystem II complex from a cyanobacterium… | electron microscopy | B, b | SQD, MGE, CLA, BCR, DGD | 9 (best 0.83) |
| 7CZL | Structural insights into a dimeric PSB27-photosystem II complex from a cyanobacterium… | electron microscopy | B, b | SQD, MGE, CLA, BCR, DGD | — |
| 7D1T | Cryo-EM Structure of PSII at 1.95 angstrom resolution | electron microscopy | B, b | SQD, UNL, CLA, BCR, LMG, LHG | 8 (best 0.83) |
| 7D1T | Cryo-EM structure of psii at 1.95 ångström resolution | electron microscopy | B, b | SQD, UNL, CLA, BCR, LMG, LHG | — |
| 7D1U | Cryo-EM Structure of PSII at 2.08 angstrom resolution | electron microscopy | B, b | SQD, CLA, BCR, LMG, UNL, LHG | 10 (best 0.85) |
| 7D1U | Cryo-EM structure of psii at 2.08 ångström resolution | electron microscopy | B, b | SQD, CLA, BCR, LMG, UNL, LHG | — |
| 7DXA | PSII intermediate Psb28-RC47 | electron microscopy | b | CLA, BCR, MGE, UNL, DGD | 11 (best 0.84) |
| 7DXA | Psii intermediate PSB28-RC47 | electron microscopy | b | CLA, BCR, MGE, UNL, DGD | — |
| 7DXH | Cryo-EM structure of PSII intermediate Psb28-PSII complex | electron microscopy | b | MGE, CLA, BCR, UNL, DGD | 9 (best 0.81) |
| 7DXH | Cryo-EM structure of psii intermediate PSB28-psii complex | electron microscopy | b | MGE, CLA, BCR, UNL, DGD | — |
| 7EDA | Structure of monomeric photosystem II | electron microscopy | B | CLA, BCR, UNL, LMG, LHG, DGD | 6 (best 0.81) |
| 7EDA | Structure of monomeric photosystem II | electron microscopy | B | CLA, BCR, UNL, LMG, LHG, DGD | — |
| 8GN0 | Crystal structure of DCBQ-bound photosystem II complex | x-ray diffraction | B, b | UNL, CA, CLA, BCR, SQD, LMG | 8 (best 0.83) |
| 8GN1 | Crystal structure of DBBQ-bound photosystem II complex | x-ray diffraction | B, b | SQD, UNL, CA, CLA, BCR, LMG | 8 (best 0.83) |
| 8GN2 | Crystal structure of PPBQ-bound photosystem II complex | x-ray diffraction | B, b | SQD, UNL, CA, CLA, BCR, LMG | 8 (best 0.83) |
| 8IR5 | XFEL structure of cyanobacterial photosystem II under dark conditions | x-ray diffraction | B, b | SQD, LHG, CLA, BCR, LMG, UNL | 8 (best 0.82) |
| 8IR6 | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 20-nanosecond delay | x-ray diffraction | B, b | SQD, LHG, CLA, BCR, LMG, UNL | 7 (best 0.83) |
| 8IR7 | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-nanosecond delay | x-ray diffraction | B, b | SQD, LHG, CLA, BCR, LMG, UNL | 7 (best 0.83) |
| 8IR8 | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 1-microsecond delay | x-ray diffraction | B, b | SQD, LHG, CLA, BCR, LMG, UNL | 8 (best 0.83) |
| 8IR9 | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 30-microsecond delay | x-ray diffraction | B, b | SQD, LHG, CLA, BCR, LMG, UNL | 7 (best 0.83) |
| 8IRA | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-microsecond… | x-ray diffraction | B, b | SQD, LHG, CLA, BCR, LMG, UNL | 8 (best 0.82) |
| 8IRB | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay | x-ray diffraction | B, b | SQD, LHG, CLA, BCR, LMG, UNL | 8 (best 0.83) |
8 records more on the page itself.
Ligands
- BCR · Beta-carotene · in 60 records
- CLA · Chlorophyll A · in 60 records
- DGD · Digalactosyl diacyl glycerol (dgdg) · in 60 records
- UNL · Unknown ligand · in 56 records
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 54 records
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 54 records
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 54 records
- CA · Calcium ion · in 25 records
- MGE · (1S)-2-(alpha-L-allopyranosyloxy)-1-[(tridecanoyloxy) methyl]ethyl palmitate · in 6 records
Experiment against prediction
- 8GN2 chain b against the predicted model D0VWR1: TM-score 1.00, RMSD 0.24 Å
- 4UB6 chain B against the predicted model D0VWR1: TM-score 1.00, RMSD 0.25 Å
- 4UB6 chain B against the predicted model D0VWR1: TM-score 1.00, RMSD 0.25 Å
- 8IRB chain b against the predicted model D0VWR1: TM-score 1.00, RMSD 0.25 Å
- 8IRG chain b against the predicted model D0VWR1: TM-score 1.00, RMSD 0.25 Å
- 8IR6 chain b against the predicted model D0VWR1: TM-score 1.00, RMSD 0.25 Å
- 8IR7 chain b against the predicted model D0VWR1: TM-score 1.00, RMSD 0.25 Å
- 8IR5 chain b against the predicted model D0VWR1: TM-score 1.00, RMSD 0.26 Å
- 8IR6 chain B against the predicted model D0VWR1: TM-score 1.00, RMSD 0.26 Å
- 8IRD chain B against the predicted model D0VWR1: TM-score 1.00, RMSD 0.26 Å
Elsewhere
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