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Ligand · ZPD

ZPD · (4S,8R,12S,16S,20S)-4,8,12,16,20-pentamethylheptacosyl (1R,2S,3S,4R,5R)-2,3,4-trihydroxy-5-(hydroxymethyl) cyclohexyl hydrogen (R)-phosphate

ZPD, (4S,8R,12S,16S,20S)-4,8,12,16,20-pentamethylheptacosyl (1R,2S,3S,4R,5R)-2,3,4-trihydroxy-5-(hydroxymethyl) cyclohexyl hydrogen (R)-phosphate (C39 H79 O8 P, 707.0 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB…

Component
ZPD
Formula
C39 H79 O8 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

ZPD in 2 structures; the first of them:

  • 7MX4 · CD1c with antigen analogue 1 · ZPD A302 · binds PHE10, VAL12, ILE13, GLN14, GLY28, SER29, GLY30, HIS38 and 24 more
  • 7MX4 · CD1C with antigen analogue 1 · ZPD A302 · binds VAL12, GLN14, GLY28, SER29, HIS38, GLY39, ILE47, PHE58 and 13 more

Residues it binds most

PHE 2, GLY 2, LEU 2, ILE 2, VAL 2, THR 2, ALA 2, GLN 2, HIS 2, SER 2 (residue and the binding sites it lines).

Found with

  • D12 · Dodecane
  • ZP7 · (2S)-2,3-dihydroxypropyl hexadecanoate
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • MLA · Malonic acid
  • NHE · 2-[N-cyclohexylamino]ethane sulfonic acid

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