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Ligand · Z8V

Z8V · N-[(2R,3S,4R,5R,6R)-4,5-dihydroxy-2,6-bis(hydroxymethyl)piperidin-3-yl]acetamide

Z8V, N-[(2R,3S,4R,5R,6R)-4,5-dihydroxy-2,6-bis(hydroxymethyl)piperidin-3-yl]acetamide (C9 H18 N2 O5, 234.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å…

Component
Z8V
Formula
C9 H18 N2 O5
Class
ligand
Structures
2
PDB entries
1

Binding sites

Z8V in 2 structures; the first of them:

  • 7MFL · Structure of the Clostridium perfringens GH89 in complex with beta-HNJNAc · Z8V A1009 · binds ASN299, CYS301, TYR305, TRP366, MET369, TRP433, HIS482, GLU483 and 9 more
  • 7MFL · Structure of the clostridium perfringens GH89 in complex with beta- hnjnac · Z8V A1009 · binds ASN299, CYS301, TYR305, TRP366, MET369, TRP433, HIS482, GLU483 and 8 more

Residues it binds most

TRP 2, LEU 2, GLU 2, TYR 2, ASN 2, CYS 2, GLN 2, HIS 2, MET 2, PHE 2 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol

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