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Ligand · Z6J

Z6J · alpha-L-ribofuranose

Z6J, alpha-L-ribofuranose (C5 H10 O5, 150.1 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
Z6J
Formula
C5 H10 O5
Class
sugar
Structures
6
PDB entries
3

Binding sites

Z6J in 6 structures; the first of them:

  • 4Q0P · Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase in complex with L-ribose · Z6J A503 · binds ARG8, TYR11, ASP12, ARG16, GLU31, VAL34, ASN35, ASP36
  • 4Q0U · Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase mutant E204Q in complex… · Z6J A503 · binds ARG8, TYR11, ASP12, ARG16, VAL34, ASN35, ASP36
  • 4QEE · Room temperature X-ray structure of D-xylose isomerase in complex with two Ni2+ ions and… · Z6J A403 · binds TRP16, HIS54, PHE94, TRP137, GLU181, GLU217, HIS220, ASP245 and 2 more
  • 4Q0P · Crystal structure of acinetobacter sp. DL28 L-ribose isomerase in complex with L-ribose · Z6J A503 · binds ARG8, TYR11, ASP12, ARG16, GLU31, VAL34, ASN35, ASP36
  • 4Q0U · Crystal structure of acinetobacter sp. DL28 L-ribose isomerase mutant E204Q in complex… · Z6J A503 · binds ARG8, TYR11, ASP12, ARG16, VAL34, ASN35, ASP36
  • 4QEE · Room temperature X-ray structure of D-xylose isomerase in complex with two NI2+ ions and… · Z6J A403 · binds TRP16, HIS54, PHE94, TRP137, GLU181, GLU217, HIS220, ASP245 and 2 more

Residues it binds most

ASP 10, ARG 8, GLU 4, ASN 4, HIS 2, SER 2, TRP 2, TYR 4, VAL 4, ALA 2 (residue and the binding sites it lines).

Found with

  • NCO · Cobalt hexammine(iii)
  • CO · Cobalt (II) ion
  • 0MK · beta-L-ribopyranose
  • NI · Nickel (II) ion
  • ROR · L-ribose

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