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Ligand · YXM

YXM · N-[(1R,2R)-1,3-dihydroxy-1-(4-nitrophenyl)propan-2-yl]-5-(triphenyl-lambda~5~-phosphanyl)pentanamide

YXM, N-[(1R,2R)-1,3-dihydroxy-1-(4-nitrophenyl)propan-2-yl]-5-(triphenyl-lambda~5~-phosphanyl)pentanamide (C32 H35 N2 O5 P, 558.6 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its…

Component
YXM
Formula
C32 H35 N2 O5 P
Class
ligand
Structures
1
PDB entries
1

Binding sites

YXM in 1 structure; the first of them:

  • 7MD7 · Crystal structure of the Thermus thermophilus 70S ribosome in complex with… · YXM 1A4055 · binds A2058, G2061, A2062, A2451, C2452, 2MA2503, U2504, G2505 and 5 more

Residues it binds most

U 2, A 2, C 2, G 2, 2MA 2, LYS 2 (residue and the binding sites it lines).

Found with

  • ARG · Arginine
  • SF4 · Iron/sulfur cluster
  • MG · Magnesium ion
  • ZN · Zinc ion
  • MPD · (4S)-2-methyl-2,4-pentanediol

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