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Ligand · YTN

YTN · (3~{R},4~{R})-4-(1,3-benzodioxol-5-ylmethyl)-3-[(3,4,5-trimethoxyphenyl)methyl]oxolan-2-one

YTN, (3~{R},4~{R})-4-(1,3-benzodioxol-5-ylmethyl)-3-[(3,4,5-trimethoxyphenyl)methyl]oxolan-2-one (C22 H24 O7, 400.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
YTN
Formula
C22 H24 O7
Class
ligand
Structures
2
PDB entries
1

Binding sites

YTN in 2 structures; the first of them:

  • 7E38 · Crystal structure of deoxypodophyllotoxin synthase from Sinopodophyllum hexandrum in… · YTN A404 · binds PRO80, GLU81, TYR82, THR86, HIS165, MET167, LEU181, SER182 and 11 more
  • 7E38 · Crystal structure of deoxypodophyllotoxin synthase from sinopodophyllum hexandrum in… · YTN A404 · binds PRO80, GLU81, THR86, HIS165, MET167, LEU181, HIS184, LYS185 and 7 more

Residues it binds most

PHE 4, HIS 4, LEU 4, LYS 4, SER 3, ASP 4, GLU 4, MET 4, PRO 4, THR 4 (residue and the binding sites it lines).

Found with

  • YTC · (3~{S},4~{S})-4-(1,3-benzodioxol-5-ylmethyl)-3-[(3,4,5-trimethoxyphenyl)methyl]oxolan-2-one
  • FE · Fe (III) ion
  • SIN · Succinic acid

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