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Ligand · YTC

YTC · (3~{S},4~{S})-4-(1,3-benzodioxol-5-ylmethyl)-3-[(3,4,5-trimethoxyphenyl)methyl]oxolan-2-one

YTC, (3~{S},4~{S})-4-(1,3-benzodioxol-5-ylmethyl)-3-[(3,4,5-trimethoxyphenyl)methyl]oxolan-2-one (C22 H24 O7, 400.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
YTC
Formula
C22 H24 O7
Class
ligand
Structures
2
PDB entries
1

Binding sites

YTC in 2 structures; the first of them:

  • 7E38 · Crystal structure of deoxypodophyllotoxin synthase from Sinopodophyllum hexandrum in… · YTC A403 · binds PRO80, GLU81, TYR82, THR86, LEU163, HIS165, MET167, LEU181 and 11 more
  • 7E38 · Crystal structure of deoxypodophyllotoxin synthase from sinopodophyllum hexandrum in… · YTC A403 · binds PRO80, GLU81, TYR82, THR86, LEU163, HIS165, MET167, LEU181 and 10 more

Residues it binds most

LEU 4, PHE 4, HIS 4, LYS 4, ASP 4, GLU 4, MET 4, PRO 4, THR 4, TYR 4 (residue and the binding sites it lines).

Found with

  • YTN · (3~{R},4~{R})-4-(1,3-benzodioxol-5-ylmethyl)-3-[(3,4,5-trimethoxyphenyl)methyl]oxolan-2-one
  • FE · Fe (III) ion
  • SIN · Succinic acid

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