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Ligand · YS7

YS7 · (1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-amino-2,3,4,6-tetradeoxy-6-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-alpha-D-erythro-hexopyranoside

YS7, (1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl…

Component
YS7
Formula
C27 H49 N6 O12 P
Class
ligand
Structures
1
PDB entries
1

Binding sites

YS7 in 1 structure; the first of them:

  • 7LLD · Crystal structure of GENB4 in complex with external aldimine of plp- sisomicin · YS7 A602 · binds THR109, GLY110, THR111, TYR135, HIS136, GLY137, SER183, GLU185 and 13 more

Residues it binds most

THR 1, GLY 1, TYR 1, ASP 1, PHE 1, ALA 1, GLU 1, HIS 1, LYS 1, MET 1 (residue and the binding sites it lines).

Found with

  • SBV · (1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-amino-2,3,4,6-tetradeoxy-6-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-beta-L-threo-hexopyranoside
  • CL · Chloride ion
  • PG4 · Tetraethylene glycol

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