GL1X · GenesisL1 explorer

Ligand · SBV

SBV · (1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-amino-2,3,4,6-tetradeoxy-6-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-beta-L-threo-hexopyranoside

SBV, (1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl…

Component
SBV
Formula
C27 H49 N6 O12 P
Class
ligand
Structures
1
PDB entries
1

Binding sites

SBV in 1 structure; the first of them:

  • 7LLD · Crystal structure of GENB4 in complex with external aldimine of plp- sisomicin · SBV B501 · binds GLY266, THR267, TYR268, ASP52, THR109, GLY110, THR111, TYR135 and 14 more

Residues it binds most

THR 1, ASP 1, GLY 1, TYR 1, SER 1, ALA 1, GLU 1, HIS 1, LYS 1, MET 1 (residue and the binding sites it lines).

Found with

  • YS7 · (1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-amino-2,3,4,6-tetradeoxy-6-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-alpha-D-erythro-hexopyranoside
  • CL · Chloride ion
  • PG4 · Tetraethylene glycol

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