Ligand · YRB
YRB · (3R,6R,9S,12S,15S,18S,20R,24aR)-6-[(2S)-butan-2-yl]-3,12-bis[(1R)-1-hydroxy-2-methylpropyl]-8,9,11,17,18-pentamethyl-15-[(2S)-2-methylbutyl]hexadecahydropyrido[1,2-a][1,4,7,10,13,16,19]heptaazacyclohenicosine-1,4,7,10,13,16,19(21H)-heptone
YRB, (3R,6R,9S,12S,15S,18S,20R,24aR)-6-[(2S)-butan-2-yl]-3,12-bis[(1R)-1-hydroxy-2-methylpropyl]-8,9,11,17,18-pentamethyl-15-[(2S)-2-methylbutyl]hexadecahydropyrido[1,2-a][1,4,7,10,13,16,19]heptaazacyclohenicosine-1,4,7,10,13,16,19(21H)-hep…
- Component
- YRB
- Formula
- C40 H71 N7 O9
- Class
- ligand
- Structures
- 1
- PDB entries
- 1
Binding sites
YRB in 1 structure; the first of them:
- 8G6J · mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2) · YRB EF503 · binds LEU138, TYR141, THR142, LYS146, LYS180, ILE181, GLN343, ILE345 and 13 more
Residues it binds most
ARG 1, ILE 1, GLY 1, LEU 1, LYS 1, PHE 1, VAL 1, ALA 1, ASP 1, GLN 1 (residue and the binding sites it lines).
Found with
- 3HE · 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione
- GSP · 5'-guanosine-diphosphate-monothiophosphate
- HMT · (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine
- MET · Methionine
- PHE · Phenylalanine
- PUT · 1,4-diaminobutane
- SPD · Spermidine
- K · Potassium ion
- MG · Magnesium ion
- ZN · Zinc ion
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