GL1X · GenesisL1 explorer

Ligand · YQS

YQS · [[(2~{R},3~{S},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphoryl] phosphono hydrogen phosphate

YQS, [[(2~{R},3~{S},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphoryl] phosphono hydrogen phosphate (C10 H17 N2 O13 P3 S, 498.2 g/mol), in the MolNFT structures on GenesisL1: bound…

Component
YQS
Formula
C10 H17 N2 O13 P3 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

YQS in 2 structures; the first of them:

  • 7M4K · DNA Polymerase Lambda, TTPaS:At Ca2+ Ground State Ternary Complex · YQS A612 · binds ARG386, GLY416, SER417, ARG420, CYS425, GLY426, ASP427, ASP429 and 10 more
  • 7M4K · DNA polymerase lambda, TTPAS:AT CA2+ ground state ternary complex · YQS A612 · binds ARG386, GLY416, SER417, ARG420, CYS425, GLY426, ASP427, ASP429 and 8 more

Residues it binds most

GLY 2, ARG 2, ASP 2, SER 2, ALA 2, ASN 2, CYS 2, DA 2, DC 2, PHE 2 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • NA · Sodium ion
  • EDO · 1,2-ethanediol

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