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Ligand · YNG

YNG · 7-{7-[(1R)-1-{[(4P)-6-amino-3H-purin-3-yl]methyl}-5-hydroxy-8-methyl-1,6-dihydropyrrolo[3,2-e]indole-3(2H)-carbonyl]-4-hydroxy-5-methoxy-1,6-dihydropyrrolo[3,2-e]indole-3(2H)-carbonyl}-4-hydroxy-5-methoxy-1,6-dihydropyrrolo[3,2-e]indole-3(2H)-carboxamide

YNG, 7-{7-[(1R)-1-{[(4P)-6-amino-3H-purin-3-yl]methyl}-5-hydroxy-8-methyl-1,6-dihydropyrrolo[3,2-e]indole-3(2H)-carbonyl]-4-hydroxy-5-methoxy-1,6-dihydropyrrolo[3,2-e]indole-3(2H)-carbonyl}-4-hydroxy-5-methoxy-1,6-dihydropyrrolo[3,2-e]indol…

Component
YNG
Formula
C42 H38 N12 O8
Class
ligand
Structures
2
PDB entries
1

Binding sites

YNG in 2 structures; the first of them:

  • 7LXH · Bacillus cereus DNA glycosylase AlkD bound to a CC1065-adenine nucleobase adduct and DNA… · YNG B102 · binds TYR27, MET28, TRP109, ASP110, LYS156, TRP187, GLU191, LYS194 and 11 more
  • 7LXH · Bacillus cereus DNA glycosylase alkd bound to a CC1065-adenine nucleobase adduct and DNA… · YNG B102 · binds TYR27, MET28, TRP109, ASP110, LYS156, TRP187, LYS194, DC3 and 9 more

Residues it binds most

DC 2, DT 2, DG 2, DA 2, LYS 2, TRP 2, ASP 2, MET 2, TYR 2, GLU 1 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • ORP · 2-deoxy-5-phosphono-ribose

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