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Ligand · YLY

YLY · (2R)-2-amino-6-({[(2S,3R)-3-methylpyrrolidin-2-yl]carbonyl}amino)hexanoyl [(2S,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl hydrogen (R)-phosphate

YLY, (2R)-2-amino-6-({[(2S,3R)-3-methylpyrrolidin-2-yl]carbonyl}amino)hexanoyl [(2S,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl hydrogen (R)-phosphate (C22 H35 N8 O9 P, 586.5 g/mol), in the MolNFT…

Component
YLY
Formula
C22 H35 N8 O9 P
Class
ligand
Structures
4
PDB entries
2

Binding sites

YLY in 4 structures; the first of them:

  • 2Q7H · Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate · YLY A900 · binds MET300, ALA302, LEU305, TYR306, ARG330, GLU332, GLU337, HIS338 and 20 more
  • 2ZIM · Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate · YLY A1 · binds MET300, ALA302, LEU305, TYR306, LEU309, ARG330, GLU332, GLU337 and 21 more
  • 2Q7H · Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate · YLY A900 · binds MET300, ALA302, LEU305, TYR306, ARG330, GLU332, GLU337, HIS338 and 20 more
  • 2ZIM · Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate · YLY A1 · binds MET300, ALA302, LEU305, TYR306, LEU309, ARG330, GLU332, GLU337 and 21 more

Residues it binds most

LEU 4, GLU 4, GLY 4, PHE 4, ALA 4, ARG 4, MET 4, SER 4, TYR 4, ASN 4 (residue and the binding sites it lines).

Found with

  • POP · Pyrophosphate 2-
  • EDO · 1,2-ethanediol

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