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Ligand · YLP

YLP · (S)-2-amino-6-propionamidohexanoic(((2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl phosphoric) anhydride

YLP, (S)-2-amino-6-propionamidohexanoic(((2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl phosphoric) anhydride (C19 H30 N7 O9 P, 531.5 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1…

Component
YLP
Formula
C19 H30 N7 O9 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

YLP in 2 structures; the first of them:

  • 4CH5 · Structure of pyrrolysyl-tRNA synthetase in complex with adenylated propionyl lysine · YLP A500 · binds MET300, ALA302, LEU305, TYR306, LEU309, ARG330, GLU332, GLU337 and 20 more
  • 4CH5 · Structure of pyrrolysyl-tRNA synthetase in complex with adenylated propionyl lysine · YLP A500 · binds MET300, ALA302, LEU305, TYR306, LEU309, ARG330, GLU332, GLU337 and 20 more

Residues it binds most

LEU 2, GLU 2, GLY 2, PHE 2, ALA 2, ARG 2, MET 2, SER 2, ASN 2, CYS 2 (residue and the binding sites it lines).

Found with

  • POP · Pyrophosphate 2-
  • MG · Magnesium ion
  • EDO · 1,2-ethanediol

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