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Ligand · YKP

YKP · (1S,2S)-2-((S)-2-((((S)-1-(4,4-difluorocyclohexyl) ethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid

YKP, (1S,2S)-2-((S)-2-((((S)-1-(4,4-difluorocyclohexyl) ethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid (C22 H37 F2 N3 O8 S, 541.6 g/mol), in the MolNFT structures on GenesisL1…

Component
YKP
Formula
C22 H37 F2 N3 O8 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

YKP in 2 structures; the first of them:

  • 7LZU · Structure of SARS-CoV-2 3CL protease in complex with inhibitor 12b · YKP A402 · binds HIS41, MET49, TYR54, PHE140, LEU141, ASN142, GLY143, SER144 and 12 more
  • 7LZU · Structure of SARS-cov-2 3CL protease in complex with inhibitor 12B · YKP A402 · binds HIS41, MET49, TYR54, PHE140, LEU141, ASN142, GLY143, SER144 and 12 more

Residues it binds most

HIS 4, MET 4, LEU 4, ALA 4, ARG 4, ASN 4, ASP 4, CYS 4, GLN 4, GLU 4 (residue and the binding sites it lines).

Found with

  • YKM · (1R,2S)-2-((S)-2-((((S)-1-(4,4-difluorocyclohexyl) ethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid
  • PG4 · Tetraethylene glycol

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