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Ligand · YBY

YBY · N-{[(1S)-1-carboxy-2-(4-hydroxy-3-iodophenyl)ethyl]carbamoyl}-L-glutamic acid

YBY, N-{[(1S)-1-carboxy-2-(4-hydroxy-3-iodophenyl)ethyl]carbamoyl}-L-glutamic acid (C15 H17 I N2 O8, 480.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å…

Component
YBY
Formula
C15 H17 I N2 O8
Class
ligand
Structures
2
PDB entries
1

Binding sites

YBY in 2 structures; the first of them:

  • 3D7F · A high resolution crystal structure of human glutamate carboxypeptidase II (GCPII) in a… · YBY A1 · binds PHE209, ARG210, ASN257, ASP387, GLU424, GLU425, GLY427, LEU428 and 14 more
  • 3D7F · A high resolution crystal structure of human glutamate carboxypeptidase II (gcpii) in a… · YBY A1 · binds PHE209, ARG210, ASN257, ASP387, GLU424, GLU425, GLY427, LEU428 and 14 more

Residues it binds most

ARG 2, GLU 2, GLY 2, ASN 2, ASP 2, TYR 2, HIS 2, LEU 2, LYS 2, PHE 2 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • ZN · Zinc ion
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • CL · Chloride ion

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