GL1X · GenesisL1 explorer

Ligand · Y6W

Y6W · [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl hydrogen (S)-{3-[(2R,3R,4R,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]propyl}phosphonate

Y6W, [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl hydrogen (S)-{3-[(2R,3R,4R,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]propyl}phosphonate (C18 H29 N2 O13 P…

Component
Y6W
Formula
C18 H29 N2 O13 P
Class
ligand
Structures
1
PDB entries
1

Binding sites

Y6W in 1 structure; the first of them:

  • 5FV9 · Crystal structure of GalNAc-T2 in complex with compound 16d · Y6W B1570 · binds THR143, PHE144, HIS145, ASP176, ARG201, GLY203, LEU204, SER207 and 8 more

Residues it binds most

HIS 3, GLY 3, ARG 3, ASP 3, SER 3, GLU 3, LEU 3, PHE 3, THR 3, VAL 3 (residue and the binding sites it lines).

Found with

  • UDP · Uridine-5'-diphosphate
  • MN · Manganese (II) ion
  • EDO · 1,2-ethanediol
  • GOL · Glycerol

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