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Ligand · Y6O

Y6O · (2~{S})-3-cyclohexyl-2-[(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(1~{R},2~{R},3~{S})-3-ethyl-2-[(2~{S},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-cyclohexyl]oxy-6-(hydroxymethyl)-5-oxidanyl-3-(phenylcarbonyloxy)oxan-4-yl]oxy-propanoic acid

Y6O, (2~{S})-3-cyclohexyl-2-[(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(1~{R},2~{R},3~{S})-3-ethyl-2-[(2~{S},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-cyclohexyl]oxy-6-(hydroxymethyl)-5-oxidanyl-3-(phenylcarbonyloxy)oxan…

Component
Y6O
Formula
C36 H54 O14
Class
ligand
Structures
1
PDB entries
1

Binding sites

Y6O in 1 structure; the first of them:

  • 8R5M · E-selectin complexed with glycomimetic ligand DS0567 · Y6O A308 · binds TYR44, PRO46, TYR48, GLU80, ASN82, ARG84, GLN85, GLU88 and 8 more

Residues it binds most

GLU 1, TYR 1, ARG 1, ASN 1, ASP 1, GLN 1, LYS 1, PRO 1 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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