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Ligand · Y4B

Y4B · allopregnanolone

Y4B, allopregnanolone (C21 H34 O2, 318.5 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
Y4B
Formula
C21 H34 O2
Class
ligand
Structures
6
PDB entries
6

Binding sites

Y4B in 6 structures; the first of them:

  • 8FOI · Native GABA-A receptor from the mouse brain, alpha1-beta2-gamma2 subtype, in complex with… · Y4B B502 · binds LEU297, ALA300, LEU301, TYR304, ILE238, GLN241, VAL242, TRP245 and 2 more
  • 8G4N · Native GABA-A receptor from the mouse brain, alpha1-beta2-gamma2 subtype, in complex with… · Y4B A501 · binds ILE238, GLN241, VAL242, TRP245, PRO400, LEU297, ALA300, LEU301 and 1 more
  • 8G5F · Native GABA-A receptor from the mouse brain, ortho-alpha1-alpha3-beta2-gamma2 subtype, in… · Y4B A502 · binds ILE263, GLN266, VAL267, TRP270, PRO436, LEU297, ALA300, LEU301 and 2 more
  • 8G5G · Native GABA-A receptor from the mouse brain, meta-alpha1-alpha3-beta2-gamma2 subtype, in… · Y4B A602 · binds ILE238, GLN241, VAL242, TRP245, PRO400, ALA300, LEU301, TYR304
  • 8G5H · Native GABA-A receptor from the mouse brain, ortho-alpha1-alpha3-beta2-gamma2 subtype, in… · Y4B A502 · binds ALA300, LEU301, TYR304, ILE263, GLN266, VAL267, TRP270, PRO436
  • 8SI9 · Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus… · Y4B A402 · binds LEU297, ALA300, LEU301, TYR304, ILE239, GLN242, VAL243, TRP246 and 1 more

Residues it binds most

LEU 10, ILE 10, ALA 10, GLN 10, PRO 10, TRP 10, TYR 10, VAL 10, ARG 2 (residue and the binding sites it lines).

Found with

  • ABU · Gamma-amino-butanoic acid
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • PIO · [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2, 3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate
  • R5R · Zolpidem
  • FUC · alpha-L-fucopyranose
  • D12 · Dodecane
  • POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate
  • OCT · N-octane

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