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Ligand · R5R

R5R · Zolpidem

R5R, Zolpidem (C19 H21 N3 O, 307.4 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
R5R
Formula
C19 H21 N3 O
Class
ligand
Structures
5
PDB entries
4

Binding sites

R5R in 5 structures; the first of them:

  • 8DD2 · Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus Zolpidem · R5R A402 · binds THR262, ASN265, ASP282, LEU285, MET286, PHE289, VAL290, ILE228 and 5 more
  • 8G4N · Native GABA-A receptor from the mouse brain, alpha1-beta2-gamma2 subtype, in complex with… · R5R C502 · binds PHE99, HIS101, SER158, TYR159, VAL202, GLN203, SER204, SER205 and 9 more
  • 8G5G · Native GABA-A receptor from the mouse brain, meta-alpha1-alpha3-beta2-gamma2 subtype, in… · R5R C601 · binds ASP56, MET57, TYR58, PHE77, ALA79, MET130, THR142, PHE124 and 8 more
  • 8G5H · Native GABA-A receptor from the mouse brain, ortho-alpha1-alpha3-beta2-gamma2 subtype, in… · R5R C602 · binds PHE99, HIS101, SER158, TYR159, VAL202, GLN203, SER204, SER205 and 9 more
  • 8DD2 · Human gabaa receptor ALPHA1-BETA2-GAMMA2 subtype in complex with GABA plus zolpidem · R5R A402 · binds THR262, ASN265, ASP282, LEU285, MET286, PHE289, ILE228, LEU232 and 3 more

Residues it binds most

THR 9, MET 9, PHE 9, SER 5, TYR 5, ASP 8, LEU 4, GLN 7, ASN 6, VAL 6 (residue and the binding sites it lines).

Found with

  • ABU · Gamma-amino-butanoic acid
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • PIO · [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2, 3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate
  • Y4B · allopregnanolone
  • FUC · alpha-L-fucopyranose
  • D12 · Dodecane
  • POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate
  • OCT · N-octane

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