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Ligand · XIQ

XIQ · 2-(hydroxymethyl)-5-methoxy-3,6-bis(oxidanyl)pyran-4-one

XIQ, 2-(hydroxymethyl)-5-methoxy-3,6-bis(oxidanyl)pyran-4-one (C7 H8 O6, 188.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most…

Component
XIQ
Formula
C7 H8 O6
Class
sugar
Structures
2
PDB entries
2

Binding sites

XIQ in 2 structures; the first of them:

  • 8WRY · Cryo-EM Structure of Mouse TLR4/MD-2/DLAM3 Complex · XIQ B707 · binds SER120, LYS263, LYS360
  • 8WTA · Cryo-EM Structure of Human TLR4/MD-2/DLAM3 Complex · XIQ C204 · binds SER120, PHE121, LYS122

Residues it binds most

LYS 4, SER 4, PHE 2 (residue and the binding sites it lines).

Found with

  • 0IL · (3R)-3-(tetradecanoyloxy)tetradecanoic acid
  • 2IL · (3R)-3-(dodecanoyloxy)tetradecanoic acid
  • GP4 · 2-amino-2-deoxy-4-O-phosphono-alpha-D-glucopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • BMA · beta-D-mannopyranose

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