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Ligand · XDX

XDX · (2R)-2-(alpha-D-glucopyranosyloxy)-3-(phosphonooxy) propanoic acid

XDX, (2R)-2-(alpha-D-glucopyranosyloxy)-3-(phosphonooxy) propanoic acid (C9 H17 O12 P, 348.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues…

Component
XDX
Formula
C9 H17 O12 P
Class
ligand
Structures
3
PDB entries
2

Binding sites

XDX in 3 structures; the first of them:

  • 5JT0 · Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis… · XDX A405 · binds LYS114, ASP134, TYR165, GLY183, GLY184, ARG185, VAL186, THR187 and 11 more
  • 5JUC · Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis… · XDX A405 · binds LYS114, ASP134, TYR165, GLY183, GLY184, ARG185, VAL186, THR187 and 12 more
  • 5JUC · Crystal structure of glucosyl-3-phosphoglycerate synthase from mycobacterium tuberculosis… · XDX A405 · binds LYS114, ASP134, TYR165, GLY183, GLY184, ARG185, VAL186, THR187 and 12 more

Residues it binds most

ARG 3, GLY 3, LEU 3, GLU 3, TYR 3, ASN 3, ASP 3, HIS 3, LYS 3, MET 3 (residue and the binding sites it lines).

Found with

  • UDP · Uridine-5'-diphosphate
  • MN · Manganese (II) ion
  • EDO · 1,2-ethanediol

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