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Ligand · WJD

WJD · 2-methoxy-N-phenylacetamide

WJD, 2-methoxy-N-phenylacetamide (C9 H11 N O2, 165.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
WJD
Formula
C9 H11 N O2
Class
ligand
Structures
3
PDB entries
3

Binding sites

WJD in 3 structures; the first of them:

  • 5SO2 · PanDDA analysis group deposition -- Crystal Structure of Pseudomonas Aeruginosa… · WJD A501 · binds GLY108, ILE109, LEU112, ALA163, GLN164, GLU192, ALA194, GLY199 and 6 more
  • 5RZV · EPB41L3 pandda analysis group deposition -- crystal structure of the ferm domain of human… · WJD A401 · binds CYS316, SER318, GLY319, LEU320, LEU321, ARG331, PHE332, ALA333
  • 5SAB · Pandda analysis group deposition -- crystal structure of SARS-cov-2 nendou in complex… · WJD B402 · binds VAL131, ARG135, VAL148, LYS149, LEU151, LYS181, GLY184, VAL186

Residues it binds most

GLY 4, LEU 4, ALA 3, PHE 3, VAL 3, ILE 2, SER 3, ARG 2, GLN 2, GLU 2 (residue and the binding sites it lines).

Found with

  • DMS · Dimethyl sulfoxide
  • PO4 · Phosphate ion
  • CIT · Citric acid
  • EDO · 1,2-ethanediol

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