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Ligand · VPD

VPD · 6-chloro-N-cyclopentyl-1-{5-O-[(2R)-1-hydroxy-3-methoxy-2-phosphonopropan-2-yl]-beta-D-ribofuranosyl}-1H-pyrazolo[3,4-d]pyrimidin-4-amine

VPD, 6-chloro-N-cyclopentyl-1-{5-O-[(2R)-1-hydroxy-3-methoxy-2-phosphonopropan-2-yl]-beta-D-ribofuranosyl}-1H-pyrazolo[3,4-d]pyrimidin-4-amine (C19 H29 Cl N5 O9 P, 537.9 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1…

Component
VPD
Formula
C19 H29 Cl N5 O9 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

VPD in 2 structures; the first of them:

  • 7JV8 · Human CD73 (ecto 5'-nucleotidase) in complex with compound 35 · VPD A604 · binds ASP36, HIS38, ASP85, GLN88, ASN117, HIS118, ASP121, LEU184 and 17 more
  • 7JV8 · Human CD73 (ecto 5'-nucleotidase) in complex with compound 35 · VPD A604 · binds ASP36, HIS38, ASP85, ASN117, HIS118, ASP121, LEU184, ASN186 and 13 more

Residues it binds most

ASP 8, HIS 8, ASN 8, GLY 8, ARG 8, PHE 8, LEU 8, PRO 6, SER 5, GLU 4 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • ZN · Zinc ion

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