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Ligand · VIT

VIT · Vitamin E

VIT, Vitamin E (C29 H50 O2, 430.7 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
VIT
Formula
C29 H50 O2
Class
ligand
Structures
6
PDB entries
3

Binding sites

VIT in 6 structures; the first of them:

  • 1KPM · First Structural Evidence of a Specific Inhibition of Phospholipase A2 by Vitamin E and… · VIT A401 · binds LEU2, LEU3, PHE5, GLY6, LYS7, LEU10, ALA18, ILE19 and 14 more
  • 3CXI · Structure of BthTX-I complexed with alpha-tocopherol · VIT A306 · binds LEU2, PHE3, LEU5, GLY6, LYS7, LEU10, ASN17, PRO18 and 9 more
  • 3CYL · Crystal structure of Piratoxin I (a myotoxic Lys49-PLA2) complexed with alpha-tocopherol · VIT A306 · binds LEU2, PHE3, LEU5, GLY6, LYS7, ILE9, LEU10, PRO18 and 10 more
  • 1KPM · First structural evidence of a specific inhibition of phospholipase A2 by vitamin E and… · VIT A401 · binds LEU2, LEU3, PHE5, GLY6, LYS7, LEU10, ALA18, ILE19 and 14 more
  • 3CXI · Structure of bthtx-I complexed with alpha-tocopherol · VIT A306 · binds LEU2, PHE3, LEU5, GLY6, LYS7, LEU10, ASN17, PRO18 and 9 more
  • 3CYL · Crystal structure of piratoxin I (a myotoxic LYS49-PLA2) complexed with alpha-tocopherol · VIT A306 · binds LEU2, PHE3, LEU5, GLY6, LYS7, ILE9, LEU10, PRO18 and 10 more

Residues it binds most

LEU 10, GLY 10, LYS 10, TYR 10, PHE 10, CYS 8, PRO 8, ALA 8, VAL 8, HIS 6 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • PE4 · 2-{2-[2-(2-{2-[2-(2-ethoxy-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethanol
  • ACY · Acetic acid

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