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Ligand · VF5

VF5 · [[(3~{A}~{R},4~{R},6~{R},6~{A}~{R})-4-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-2-oxidanyl-2-oxidanylidene-3~{A},4,6,6~{A}-tetrahydrofuro[3,4-D][1, 3,2]dioxaphosphol-6-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate

VF5, [[(3~{A}~{R},4~{R},6~{R},6~{A}~{R})-4-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-2-oxidanyl-2-oxidanylidene-3~{A},4,6,6~{A}-tetrahydrofuro[3,4-D][1, 3,2]dioxaphosphol-6-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate…

Component
VF5
Formula
C10 H15 N5 O16 P4
Class
ligand
Structures
2
PDB entries
1

Binding sites

VF5 in 2 structures; the first of them:

  • 7OIW · Structure of S. aureus Rel catalytic domains in complex with pppGpp · VF5 A503 · binds HIS183, HIS184, LYS311, GLN312, ASN313
  • 7OIW · Structure of S. aureus rel catalytic domains in complex with pppgpp · VF5 A503 · binds HIS183, HIS184, LYS311, GLN312, ASN313

Residues it binds most

HIS 2, ASN 2, GLN 2, LYS 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • MN · Manganese (II) ion
  • IOD · Iodide ion
  • GOL · Glycerol
  • 0O2 · guanosine 5'-(tetrahydrogen triphosphate) 3'-(trihydrogen diphosphate)
  • C1Z · Guanosine 3'-diphosphate 5'-triphosphate

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