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Ligand · V1P

V1P · 5-{(1S)-7,7-dihydroxy-1-[(1-methylazetidine-3-carbonyl)amino]nonyl}-2-phenyl-1H-imidazole-4-carboxamide

V1P, 5-{(1S)-7,7-dihydroxy-1-[(1-methylazetidine-3-carbonyl)amino]nonyl}-2-phenyl-1H-imidazole-4-carboxamide (C24 H35 N5 O4, 457.6 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with…

Component
V1P
Formula
C24 H35 N5 O4
Class
ligand
Structures
3
PDB entries
2

Binding sites

V1P in 3 structures; the first of them:

  • 6XEB · Structure of human HDAC2 in complex with ketone inhibitor (compound E) · V1P A411 · binds GLY28, HIS29, PRO30, MET31, GLU99, ASP100, HIS141, HIS142 and 9 more
  • 6XEB · Structure of human HDAC2 in complex with ketone inhibitor (compound E) · V1P A411 · binds GLY28, HIS29, PRO30, MET31, GLU99, ASP100, HIS141, HIS142 and 9 more
  • 7MOT · Structure of HDAC2 in complex with an inhibitor (compound 9) · V1P A411 · binds GLY28, HIS29, PRO30, MET31, GLU99, ASP100, HIS141, HIS142 and 9 more

Residues it binds most

HIS 9, GLY 9, ASP 9, PHE 9, GLU 9, LEU 9, MET 9, PRO 9, TYR 9 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • ZN · Zinc ion
  • SO4 · Sulfate ion
  • PEG · Di(hydroxyethyl)ether

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