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Ligand · V08

V08 · (2 {R},3 {S})-3-methanoyl-4-methyl-2-hydroxy-pentanoic acid

V08, (2 {R},3 {S})-3-methanoyl-4-methyl-2-hydroxy-pentanoic acid (C7 H12 O4, 160.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
V08
Formula
C7 H12 O4
Class
ligand
Structures
2
PDB entries
1

Binding sites

V08 in 2 structures; the first of them:

  • 7O2L · Yeast 20S proteasome in complex with the covalently bound inhibitor b-lactone… · V08 H901 · binds THR1, ARG19, SER20, THR21, LYS33, GLY45, ALA46, GLY47 and 3 more
  • 7O2L · Yeast 20S proteasome in complex with the covalently bound inhibitor B- lactone… · V08 H901 · binds THR1, ALA46, GLY47, GLY168

Residues it binds most

THR 12, ALA 9, GLY 12, SER 9, ARG 11, LYS 7, MET 4, TYR 4 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • CL · Chloride ion

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