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Ligand · UY7

UY7 · (4S)-4-hydroxy-D-proline

UY7, (4S)-4-hydroxy-D-proline (C5 H9 N O3, 131.1 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
UY7
Formula
C5 H9 N O3
Class
ligand
Structures
3
PDB entries
3

Binding sites

UY7 in 3 structures; the first of them:

  • 6X9A · Structure of proline utilization A with trans-4-hydroxy-D-proline bound in the… · UY7 A2004 · binds GLU674, PHE678, PHE708, ILE712, ARG843, SER845, ILE1001, GLY1002 and 2 more
  • 7MES · Structure of ALDH4A1 complexed with trans-4-Hydroxy-D-proline · UY7 A602 · binds GLU165, PHE169, PHE212, ILE215, LYS347, CYS348, SER349, THR511 and 3 more
  • 7VUA · Anaerobic hydroxyproline degradation involving C-N cleavage by a glycyl radical enzyme · UY7 A801 · binds MET155, ASP274, ARG319, TRP333, GLY426, CYS427, GLU429, SER440 and 4 more

Residues it binds most

PHE 6, GLU 9, ILE 6, SER 6, ARG 6, THR 5, GLY 6, GLN 4, CYS 3, LYS 3 (residue and the binding sites it lines).

Found with

  • PEG · Di(hydroxyethyl)ether
  • PGE · Triethylene glycol
  • FAD · Flavin-adenine dinucleotide
  • NAD · Nicotinamide-adenine-dinucleotide
  • SO4 · Sulfate ion
  • 1PE · Pentaethylene glycol
  • FMT · Formic acid
  • PG4 · Tetraethylene glycol

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