Ligand · UPU

UPU · [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S, 4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-hydroxy-2-(hydroxymethyl)tetrahydrofuran-3-yl hydrogen (S)-phosphate

UPU, [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S, 4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-hydroxy-2-(hydroxymethyl)tetrahydrofuran-3-yl hydrogen (S)-phosphate (C18…

Component: UPU
Formula: C18 H23 N4 O14 P
Class: ligand
Structures: 1
PDB entries: 1

Binding sites

UPU in 1 structure; the first of them:

5W0N · Structure of human TUT7 catalytic module (cm) in complex with umpnpp and U2 RNA · UPU A1403 · binds PHE1045, ASP1058, ASP1060, ILE1099, ALA1102, VAL1104, ILE1106, ASP1119 and 7 more

Residues it binds most

ASP 3, ILE 3, ALA 3, ASN 3, PHE 3, SER 3, VAL 3, GLY 2, HIS 2, LYS 2 (residue and the binding sites it lines).

Found with

2KH · 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine
MG · Magnesium ion
ZN · Zinc ion
IOD · Iodide ion
SO4 · Sulfate ion

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