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Ligand · UDH

UDH · 6-aminohexyl-uridine-C1,5'-diphosphate

UDH, 6-aminohexyl-uridine-C1,5'-diphosphate (C15 H27 N3 O12 P2, 503.3 g/mol), in the MolNFT structures on GenesisL1: bound in 10 records (9 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
UDH
Formula
C15 H27 N3 O12 P2
Class
ligand
Structures
10
PDB entries
9

Binding sites

UDH in 10 structures; the first of them:

  • 1TW5 · beta1,4-galactosyltransferase mutant M344H-Gal-T1 in complex with Chitobiose · UDH A404 · binds PRO187, PHE188, ARG189, ARG191, PHE226, ARG228, ASP252, VAL253 and 9 more
  • 3EE5 · Crystal structure of human M340H-Beta1,4-Galactosyltransferase-I (M340H-B4GAL-T1) in… · UDH A399 · binds ILE182, PRO183, PHE184, ARG185, ARG187, PHE222, ARG224, ASP248 and 11 more
  • 4EE3 · Crystal structure of human M340H-beta-1,4-galactosyltransferase-1 (M340H-B4GAL-T1) in… · UDH A406 · binds PRO183, PHE184, ARG185, ARG187, PHE222, ARG224, ASP248, VAL249 and 10 more
  • 4KRV · Crystal structure of catalytic domain of bovine beta1,4-galactosyltransferase mutant… · UDH A502 · binds PRO187, PHE188, ARG189, ARG191, PHE226, ARG228, ASP252, VAL253 and 9 more
  • 1TW5 · BETA1,4-galactosyltransferase mutant M344H-gal-T1 in complex with chitobiose · UDH A404 · binds PRO187, PHE188, ARG189, ARG191, PHE226, ARG228, ASP252, VAL253 and 9 more
  • 2AE7 · Crystal structure of human M340H-BETA1,4-galactosyltransferase-I (M340H-B4GAL-T1) in… · UDH A399 · binds ILE182, PRO183, PHE184, ARG185, ARG187, PHE222, ARG224, ASP248 and 11 more
  • 2AEC · Crystal structure of human M340H-BETA1,4-galactosyltransferase-I (M340H-B4GAL-T1) in… · UDH A399 · binds ILE182, PRO183, PHE184, ARG185, ARG187, PHE222, ARG224, ASP248 and 11 more
  • 2AES · Crystal structure of human M340H-BETA1,4-galactosyltransferase-I (M340H-B4GAL-T1) in… · UDH A399 · binds ILE182, PRO183, PHE184, ARG185, ARG187, PHE222, ARG224, ASP248 and 11 more
  • 2AGD · Crystal structure of human M340H-beta-1,4-galactosyltransferase- I(M340H-B4GAL-T1) in… · UDH A399 · binds ILE182, PRO183, PHE184, ARG185, ARG187, PHE222, ARG224, ASP248 and 11 more
  • 2AH9 · Crystal structure of human M340H-beta-1,4-galactosyltransferase-I (M340H-B4GAL-T1) in… · UDH A399 · binds ILE182, PRO183, PHE184, ARG185, ARG187, PHE222, ARG224, ASP248 and 11 more

Residues it binds most

ARG 27, ASP 27, HIS 27, PHE 27, LYS 27, PRO 27, ASN 27, TRP 27, VAL 27, SER 20 (residue and the binding sites it lines).

Found with

  • MN · Manganese (II) ion
  • SO4 · Sulfate ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • DIO · 1,4-diethylene dioxide
  • GOL · Glycerol
  • MES · 2-(N-morpholino)-ethanesulfonic acid
  • MAN · alpha-D-mannopyranose
  • BMA · beta-D-mannopyranose
  • GAL · beta-D-galactopyranose
  • 2NA · naphthalen-2-ylmethanol
  • NGS · 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose
  • BGC · beta-D-glucopyranose

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