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Ligand · UBO

UBO · beta-D-rhamnopyranose

UBO, beta-D-rhamnopyranose (C6 H12 O5, 164.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
UBO
Formula
C6 H12 O5
Class
sugar
Structures
2
PDB entries
2

Binding sites

UBO in 2 structures; the first of them:

  • 8DKU · CryoEM structure of the A. aeolicus WzmWzt transporter bound to the native O antigen · UBO F2 · binds TYR233, MET236, ASP354, HIS355, TRP362
  • 8DNC · CryoEM structure of the A. aeolicus WzmWzt transporter bound to the native O antigen and… · UBO E2 · binds TYR233, MET236, ASP354, HIS355, TRP362, VAL380

Residues it binds most

ASP 2, HIS 2, MET 2, TRP 2, TYR 2, VAL 1 (residue and the binding sites it lines).

Found with

  • XXR · alpha-D-rhamnopyranose
  • UBH · 3-O-methyl-alpha-D-rhamnopyranose
  • ADP · Adenosine-5'-diphosphate
  • MG · Magnesium ion

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