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Ligand · UBH

UBH · 3-O-methyl-alpha-D-rhamnopyranose

UBH, 3-O-methyl-alpha-D-rhamnopyranose (C7 H14 O5, 178.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
UBH
Formula
C7 H14 O5
Class
sugar
Structures
2
PDB entries
2

Binding sites

UBH in 2 structures; the first of them:

  • 8DKU · CryoEM structure of the A. aeolicus WzmWzt transporter bound to the native O antigen · UBH F3 · binds GLY298, ILE299, LEU300, GLY311, ILE312, ASN313, LEU316, THR346 and 6 more
  • 8DNC · CryoEM structure of the A. aeolicus WzmWzt transporter bound to the native O antigen and… · UBH E3 · binds GLY298, ILE299, LEU300, GLY311, ILE312, ASN313, THR346, ALA348 and 4 more

Residues it binds most

GLY 2, ILE 2, LEU 2, VAL 2, ALA 2, ASN 2, HIS 2, MET 2, THR 2, TRP 2 (residue and the binding sites it lines).

Found with

  • XXR · alpha-D-rhamnopyranose
  • UBO · beta-D-rhamnopyranose
  • ADP · Adenosine-5'-diphosphate
  • MG · Magnesium ion

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