Ligand · UBD
UBD · Uridine 3',5'-bis(dihydrogen phosphate)
UBD, Uridine 3',5'-bis(dihydrogen phosphate) (C9 H14 N2 O12 P2, 404.2 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…
- Component
- UBD
- Formula
- C9 H14 N2 O12 P2
- Class
- ligand
- Structures
- 5
- PDB entries
- 3
Binding sites
UBD in 5 structures; the first of them:
- 4J7L · Crystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ions · UBD A401 · binds SER28, LEU29, ARG30, THR31, GLN32, GLY358, GLY359, PRO360
- 4J7M · Crystal structure of mouse DXO in complex with substrate mimic RNA and calcium ion · UBD A401 · binds SER28, LEU29, ARG30, THR31, GLN32, GLY358, GLY359, PRO360
- 4J7L · Crystal structure of mouse dxo in complex with product RNA and two magnesium ions · UBD A401 · binds SER28, LEU29, ARG30, THR31, GLN32, GLY358, GLY359, PRO360
- 4J7M · Crystal structure of mouse dxo in complex with substrate mimic RNA and calcium ion · UBD A401 · binds SER28, LEU29, ARG30, THR31, GLN32, GLY358, GLY359, PRO360
- 6ASO · Structure of yeast U6 snrnp with 3'-phosphate terminated U6 RNA · UBD I113 · binds LYS20, ARG21, ASP71, THR72, ARG74, THR76, GLN77, THR89 and 3 more
Residues it binds most
THR 7, ARG 7, GLY 4, GLN 7, LEU 6, PRO 4, SER 4, ASN 3, GLU 2, HIS 2 (residue and the binding sites it lines).
Found with
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