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Ligand · TP7

TP7 · Coenzyme B

TP7, Coenzyme B (C11 H22 N O7 P S, 343.3 g/mol), in the MolNFT structures on GenesisL1: bound in 7 records (7 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
TP7
Formula
C11 H22 N O7 P S
Class
ligand
Structures
7
PDB entries
7

Binding sites

TP7 in 7 structures; the first of them:

  • 5G0R · Methyl-coenzyme M reductase I from methanothermobacter marburgensis exposed to… · TP7 A557 · binds ARG270, AGM271, LEU320, MET324, SER325, PHE330, PHE443, ALA479 and 14 more
  • 5N1Q · Methyl-coenzyme M reductase III from methanothermococcus thermolithotrophicus at 1.9 a… · TP7 A601 · binds ARG274, LEU323, MET327, SER328, PHE333, PHE446, ALA482, MET483 and 13 more
  • 5N2A · Methyl-coenzyme M reductase III from methanotorris formicicus trigonal form · TP7 A602 · binds ARG273, AGM274, LEU322, MET326, SER327, PHE332, PHE445, ALA481 and 11 more
  • 5ODH · Heterodisulfide reductase / [NiFe]-hydrogenase complex from Methanothermococcus… · TP7 H304 · binds ARG14, ALA44, VAL47, ARG201, ALA202, LEU205, PHE233, ARG240 and 3 more
  • 7B1S · Crystal structure of the ethyl-coenzyme M reductase from Candidatus Ethanoperedens… · TP7 A602 · binds ARG304, LEU362, LEU366, ALA367, TRP373, PHE488, ALA524, MET525 and 13 more
  • 7SXM · Structure of Xenon-derivatized Methyl-Coenzyme M Reductase from Methanothermobacter… · TP7 A604 · binds ARG270, AGM271, LEU320, MET324, SER325, PHE330, PHE443, ALA479 and 14 more
  • 9ECN · M. acetivorans MCR containing a 2-methylglutamine modification · TP7 B2002 · binds ARG1284, AGM1285, LEU1333, MET1337, SER1338, PHE1343, PHE1463, ALA1499 and 14 more

Residues it binds most

PHE 11, VAL 11, ARG 11, GLY 10, MET 10, ALA 11, LEU 11, ASN 10, HIS 10, TYR 10 (residue and the binding sites it lines).

Found with

  • COM · 1-thioethanesulfonic acid
  • F43 · Factor 430
  • K · Potassium ion
  • MG · Magnesium ion
  • GOL · Glycerol
  • NA · Sodium ion
  • CL · Chloride ion
  • ACT · Acetate ion
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol
  • 9S8 · Non-cubane [4Fe-4S]-cluster
  • FAD · Flavin-adenine dinucleotide
  • FES · Fe2/s2 (inorganic) cluster

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