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Ligand · TOC

TOC · 2,6-diammonio-2,3,6-trideoxy-alpha-D-glucopyranose

TOC, 2,6-diammonio-2,3,6-trideoxy-alpha-D-glucopyranose (C6 H16 N2 O3 +2, 164.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
TOC
Formula
C6 H16 N2 O3 +2
Class
sugar
Structures
4
PDB entries
2

Binding sites

TOC in 4 structures; the first of them:

  • 1TOB · Saccharide-RNA recognition in an aminoglycoside antibiotic-RNA aptamer complex, NMR, 7… · TOC A30 · binds U11, U12, G14, C15, U16
  • 2TOB · Solution structure of the tobramycin-RNA aptamer complex, NMR, 13 structures · TOC A102 · binds U11, U12, G14, G15, U16
  • 1TOB · Saccharide-RNA recognition in an aminoglycoside antibiotic-RNA aptamer complex, NMR, 7… · TOC A30 · binds U11, U12, G14, C15, U16
  • 2TOB · Solution structure of the tobramycin-RNA aptamer complex, NMR, 13 structures · TOC A102 · binds U11, U12, G14, G15, U16

Residues it binds most

U 4, G 4, C 2 (residue and the binding sites it lines).

Found with

  • TOA · 3-ammonio-3-deoxy-alpha-D-glucopyranose
  • 2TB · 1,3-diamino-4,5,6-trihydroxy-cyclohexane
  • TOB · 1,3-diamino-5,6-dihydroxycyclohexane

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