Ligand · THM
THM · Thymidine
THM, Thymidine (C10 H14 N2 O5, 242.2 g/mol), in the MolNFT structures on GenesisL1: bound in 7 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- THM
- Formula
- C10 H14 N2 O5
- Class
- ligand
- Structures
- 7
- PDB entries
- 6
Binding sites
THM in 7 structures; the first of them:
- 5BSZ · X-ray structure of the sugar N-methyltransferase KedS8 from Streptoalloteichus sp ATCC… · THM A306 · binds TRP147, TRP148, THR152, PHE153, LEU154, HIS157, SER176, HIS185 and 1 more
- 5FUV · catalytic domain of Thymidine kinase from Trypanosoma brucei with dThd · THM A1388 · binds MET214, GLU286, GLN288, PHE289, LEU312, ALA314, ASP315, TYR316 and 9 more
- 5FUW · catalytic domain of Thymidine kinase from Trypanosoma brucei with dTMP or dThd · THM B1386 · binds MET214, GLU286, GLN288, PHE289, LEU312, ASP315, TYR316, THR352 and 7 more
- 5IDT · Crystal Structure of a Glucose-1-phosphate Thymidylyltransferase from Burkholderia… · THM A301 · binds LEU9, ALA10, GLY11, GLY12, SER13, LYS26, GLN27, GLN83 and 7 more
- 6K8P · Structural and catalytic analysis of two diverse uridine phosphorylases in the oomycete… · THM A402 · binds MET80, THR107, CYS108, GLY109, PHE202, GLN206, ARG208, VAL234 and 8 more
- 6K8P · Structural and catalytic analysis of two diverse uridine phosphorylases in the oomycete… · THM A402 · binds MET80, THR107, CYS108, GLY109, PHE202, GLN206, ARG208, VAL234 and 8 more
- 6YAG · Crystal structure of pnra from S. pneumoniae in complex with thymidine · THM C502 · binds ASP28, THR29, GLY30, ASP34, PHE37, ASN38, PHE90, ASP112 and 8 more
Residues it binds most
PHE 12, ASP 9, GLY 13, ARG 8, VAL 11, LEU 6, GLU 8, ALA 11, GLN 9, MET 7 (residue and the binding sites it lines).
Found with
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