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Ligand · TD8

TD8 · (5R)-5-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-4-methyl-5-(2-{[(phosphonatooxy)phosphinato]oxy}ethyl)-1,3-thiazol-3-ium-2-yl}-5-hydroxypentanoate

TD8, (5R)-5-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-4-methyl-5-(2-{[(phosphonatooxy)phosphinato]oxy}ethyl)-1,3-thiazol-3-ium-2-yl}-5-hydroxypentanoate (C17 H27 N4 O10 P2 S +1, 541.4 g/mol), in the MolNFT structures on GenesisL1: bound…

Component
TD8
Formula
C17 H27 N4 O10 P2 S +1
Class
ligand
Structures
2
PDB entries
1

Binding sites

TD8 in 2 structures; the first of them:

  • 3ZHU · Crystal structure of the SucA domain of Mycobacterium smegmatis KGD, second… · TD8 A2001 · binds PHE506, HIS539, ARG540, TYR578, HIS579, SER604, HIS605, LEU606 and 17 more
  • 3ZHU · Crystal structure of the suca domain of mycobacterium smegmatis kgd, second… · TD8 A2001 · binds PHE506, HIS539, ARG540, TYR578, HIS579, SER604, HIS605, LEU606 and 17 more

Residues it binds most

HIS 8, GLN 8, PHE 8, ALA 8, ASP 8, GLY 8, LEU 8, ARG 8, ASN 8, GLU 8 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • MG · Magnesium ion

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