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Ligand · TD7

TD7 · (4E)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-2(3H)-ylidene}-4-hydroxybutanoic acid

TD7, (4E)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-2(3H)-ylidene}-4-hydroxybutanoic acid (C16 H24 N4 O10 P2 S, 526.4 g/mol), in the MolNFT structures on…

Component
TD7
Formula
C16 H24 N4 O10 P2 S
Class
ligand
Structures
4
PDB entries
2

Binding sites

TD7 in 4 structures; the first of them:

  • 2Y0P · Crystal structure of the SucA domain of Mycobacterium smegmatis alpha- ketoglutarate… · TD7 A2001 · binds PHE506, HIS539, ARG540, TYR578, HIS579, SER604, HIS605, LEU606 and 16 more
  • 2YID · Crystal structure of the SucA domain of Mycobacterium smegmatis alpha- ketoglutarate… · TD7 A2001 · binds PHE506, HIS539, ARG540, TYR578, HIS579, SER604, HIS605, LEU606 and 16 more
  • 2Y0P · Crystal structure of the suca domain of mycobacterium smegmatis alpha-ketoglutarate… · TD7 A2001 · binds PHE506, HIS539, ARG540, TYR578, HIS579, SER604, HIS605, LEU606 and 16 more
  • 2YID · Crystal structure of the suca domain of mycobacterium smegmatis alpha-ketoglutarate… · TD7 A2001 · binds PHE506, HIS539, ARG540, TYR578, HIS579, SER604, HIS605, LEU606 and 16 more

Residues it binds most

HIS 16, GLN 16, PHE 16, ALA 16, GLY 16, LEU 16, ARG 16, ASN 16, ASP 16, GLU 16 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ACO · Acetyl coenzyme *A
  • CA · Calcium ion

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