Ligand · T55
T55 · 8-methylnonanoic acid
T55, 8-methylnonanoic acid (C10 H20 O2, 172.3 g/mol), in the MolNFT structures on GenesisL1: bound in 12 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- T55
- Formula
- C10 H20 O2
- Class
- ligand
- Structures
- 12
- PDB entries
- 6
Binding sites
T55 in 12 structures; the first of them:
- 2XAD · Crystal structure of deacetylase-teicoplanin complex in biosynthesis pathway of… · T55 E711 · binds ASP18, ASP19, LEU22, HIS161, PRO189, TYR190, VAL226, TYR229 and 4 more
- 3VFJ · The structure of monodechloro-teicoplanin in complex with its ligand, using MBP as a… · T55 G9 · binds 3MY2, 3FG3, GHP4, GHP5, OMX6
- 3VFK · The structure of monodechloro-teicoplanin in complex with its ligand, using ubiquitin as… · T55 G9 · binds 3MY2, GHP4
- 4PJZ · Crystal structure of T4 lysozyme-gss-peptide in complex with teicoplanin-A2-2 · T55 B102 · binds 3MY2, GHP4, ARG8, LEU13, ILE29, LYS60, ALA63, GLU64
- 4PK0 · Crystal structure of T4 lysozyme-peptide in complex with teicoplanin-A2-2 · T55 A201 · binds 3MY2, GHP4, ARG8, LEU13, ILE29, LYS60, ALA63, GLU64 and 1 more
- 5AWV · Crystal structure of glycopeptide hexose oxidase DBV29 complexed with teicoplanin · T55 B602 · binds VAL301, MET304, PRO362, SER364, ASP394, TYR395, TRP399, ILE429 and 5 more
- 2XAD · Crystal structure of deacetylase-teicoplanin complex in biosynthesis pathway of… · T55 E711 · binds ASP18, ASP19, LEU22, HIS161, PRO189, TYR190, VAL226, TYR229 and 4 more
- 3VFJ · The structure of monodechloro-teicoplanin in complex with its ligand, using mbp as a… · T55 G9 · binds 3MY2, 3FG3, GHP4, GHP5, OMX6
- 3VFK · The structure of monodechloro-teicoplanin in complex with its ligand, using ubiquitin as… · T55 G9 · binds 3MY2, GHP4
- 4PJZ · Crystal structure of T4 lysozyme-gss-peptide in complex with teicoplanin-A2-2 · T55 B102 · binds 3MY2, GHP4, ARG8, LEU13, ILE29, LYS60, ALA63, GLU64
- 4PK0 · Crystal structure of T4 lysozyme-peptide in complex with teicoplanin- A2-2 · T55 A201 · binds 3MY2, GHP4, ARG8, LEU13, ILE29, LYS60, ALA63, GLU64 and 1 more
- 5AWV · Crystal structure of glycopeptide hexose oxidase DBV29 complexed with teicoplanin · T55 B602 · binds VAL301, MET304, PRO362, SER364, ASP394, TYR395, TRP399, ILE429 and 5 more
Residues it binds most
GHP 28, TYR 14, ASP 14, OMY 18, LEU 12, PRO 14, ALA 12, VAL 12, 3MY 10, TRP 6 (residue and the binding sites it lines).
Found with
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
- GCS · 2-amino-2-deoxy-beta-D-glucopyranose
- MAN · alpha-D-mannopyranose
- PO4 · Phosphate ion
- GOL · Glycerol
- FAD · Flavin-adenine dinucleotide
- NA · Sodium ion
- ZN · Zinc ion
- BMA · beta-D-mannopyranose
- N1L · 2-amino-2-deoxy-beta-D-glucopyranuronic acid
- CL · Chloride ion
- ACT · Acetate ion
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