Ligand · SGF

SGF · (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl 3-O-sulfo-beta-D-galactopyranoside

SGF, (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl 3-O-sulfo-beta-D-galactopyranoside (C24 H47 N O10 S, 541.7 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within…

Component: SGF
Formula: C24 H47 N O10 S
Class: ligand
Structures: 3
PDB entries: 2

Binding sites

SGF in 3 structures; the first of them:

4ELM · Crystal structure of the mouse CD1d-lysosulfatide-Hy19.3 TCR complex · SGF A305 · binds TYR73, SER76, PHE77, ASP80, ILE81, LEU84, VAL85, ILE98 and 15 more
8GLE · Crystal Structure of Human CD1b in Complex with Lysosulfatide · SGF A401 · binds PHE10, VAL12, HIS38, PHE49, VAL63, LEU66, ILE69, PHE70 and 14 more
4ELM · Crystal structure of the mouse CD1D-lysosulfatide-HY19.3 TCR complex · SGF A305 · binds TYR73, SER76, PHE77, ASP80, ILE81, LEU84, VAL85, ILE98 and 15 more

Residues it binds most

PHE 5, LEU 5, VAL 5, ILE 5, TRP 4, ASP 4, SER 4, THR 5, TYR 5, HIS 5 (residue and the binding sites it lines).

Found with

BMA · beta-D-mannopyranose
FUC · alpha-L-fucopyranose
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
PLM · Palmitic acid
CUY · tetracosyl octadecanoate
MAN · alpha-D-mannopyranose
CL · Chloride ion
IOD · Iodide ion
EDO · 1,2-ethanediol

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