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Ligand · SDR

SDR · (2S)-2-[(N-acetyl-L-alpha-aspartyl)amino]nonanoic acid

SDR, (2S)-2-[(N-acetyl-L-alpha-aspartyl)amino]nonanoic acid (C15 H26 N2 O6, 330.4 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
SDR
Formula
C15 H26 N2 O6
Class
ligand
Structures
4
PDB entries
2

Binding sites

SDR in 4 structures; the first of them:

  • 3SJE · X-ray structure of human glutamate carboxypeptidase II (the E424A inactive mutant) in… · SDR A1 · binds PHE209, ARG210, ASN257, LEU261, ASP387, ALA424, GLU425, GLY427 and 14 more
  • 3SJG · Human glutamate carboxypeptidase II (E424A inactive mutant ) in complex with… · SDR A1 · binds PHE209, ARG210, ASN257, ASP387, ALA424, GLU425, GLY427, LEU428 and 12 more
  • 3SJE · X-ray structure of human glutamate carboxypeptidase II (the E424A inactive mutant) in… · SDR A1 · binds PHE209, ARG210, ASN257, LEU261, ASP387, ALA424, GLU425, GLY427 and 14 more
  • 3SJG · Human glutamate carboxypeptidase II (E424A inactive mutant ) in complex with… · SDR A1 · binds PHE209, ARG210, ASN257, ASP387, ALA424, GLU425, GLY427, LEU428 and 12 more

Residues it binds most

ARG 4, TYR 4, ASN 4, ASP 4, GLY 4, SER 4, GLU 4, LEU 4, ALA 4, HIS 4 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • ZN · Zinc ion
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • CL · Chloride ion

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