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Ligand · SBE

SBE · 1,3,2-dioxaborolan-2-ol

SBE, 1,3,2-dioxaborolan-2-ol (C2 H5 B O3, 87.9 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
SBE
Formula
C2 H5 B O3
Class
ligand
Structures
4
PDB entries
2

Binding sites

SBE in 4 structures; the first of them:

  • 1S82 · Porcine trypsin complexed with borate and ethylene glycol · SBE A12 · binds PHE41, CYS42, HIS57, GLN192, GLY193, ASP194, SER195
  • 4J5S · TARG1 (C6orf130), Terminal ADP-ribose Glycohydrolase 1 ADP-ribose complex · SBE B202 · binds ARG122, LEU155
  • 1S82 · Porcine trypsin complexed with borate and ethylene glycol · SBE A12 · binds PHE41, CYS42, HIS57, GLN192, GLY193, ASP194, SER195
  • 4J5S · TARG1 (C6ORF130), terminal ADP-ribose glycohydrolase 1 ADP-ribose complex · SBE B202 · binds ARG122, LEU155

Residues it binds most

ARG 2, ASP 2, CYS 2, GLN 2, GLY 2, HIS 2, LEU 2, PHE 2, SER 2 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol
  • ZZC · [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2R,3R)-2,3-dihydroxy-4-oxo-pentoxy]-oxido-phosphoryl] phosphate
  • CA · Calcium ion
  • NA · Sodium ion
  • BO4 · Borate ion
  • CL · Chloride ion
  • SO4 · Sulfate ion

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