Ligand · RYM
RYM · 4-(benzimidazol-1-ylmethyl)benzenecarbonitrile
RYM, 4-(benzimidazol-1-ylmethyl)benzenecarbonitrile (C15 H11 N3, 233.3 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…
- Component
- RYM
- Formula
- C15 H11 N3
- Class
- ligand
- Structures
- 6
- PDB entries
- 5
Binding sites
RYM in 6 structures; the first of them:
- 5RME · PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 helicase in complex… · RYM B701 · binds GLU128, ARG129, LEU132, SER236, ALA237, PRO238, VAL241, ASN388
- 7H7A · Group deposition for crystallographic fragment screening of Chikungunya virus nsP3… · RYM C206 · binds THR111, GLY112, SER115, GLY117, LYS118, ASP119, CYS143, ARG144 and 2 more
- 5R54 · Pandda analysis group deposition -- crystal structure of human NUDT22 in complex with… · RYM A401 · binds LYS60, TYR87, PHE90, PRO120, GLU145, HIS156
- 5RME · Pandda analysis group deposition -- crystal structure of SARS-cov-2 helicase in complex… · RYM B701 · binds GLU128, ARG129, SER236, ALA237, PRO238, ASN388
- 7B8F · Notum-fragment 154 · RYM A509 · binds TRP128, TYR129, VAL187, THR236, PHE268, LEU269, ASP270, PRO287 and 3 more
- 7QU3 · X-ray structure of FAD domain of nqrf of pseudomonas aeruginosa · RYM A502 · binds ARG229, GLY281, GLY309, ALA310, SER339, PHE353, ILE354, HIS355 and 3 more
Residues it binds most
PRO 5, ARG 4, GLY 2, PHE 3, SER 4, ALA 3, ASP 2, GLU 3, THR 2, VAL 2 (residue and the binding sites it lines).
Found with
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