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Ligand · RP3

RP3 · 3-deoxy-5-O-phosphono-beta-D-ribofuranose

RP3, 3-deoxy-5-O-phosphono-beta-D-ribofuranose (C5 H11 O7 P, 214.1 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
RP3
Formula
C5 H11 O7 P
Class
sugar
Structures
1
PDB entries
1

Binding sites

RP3 in 1 structure; the first of them:

  • 5CX8 · Structure of RagB, a major immunodominant virulence factor of Porphyromonas gingivalis. · RP3 B601 · binds ASP69, TRP326, ARG438, ILE447, PHE454, LYS189, ASP207, TYR208 and 2 more

Residues it binds most

ASP 1, ARG 1, GLU 1, ILE 1, LYS 1, PHE 1, SER 1, TRP 1, TYR 1 (residue and the binding sites it lines).

Found with

  • TG6 · 6-O-phosphono-D-tagatose
  • 3DO · 3-deoxy-beta-D-glucopyranose
  • ACT · Acetate ion
  • GOL · Glycerol

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