Ligand · 3DO

3DO · 3-deoxy-beta-D-glucopyranose

3DO, 3-deoxy-beta-D-glucopyranose (C6 H12 O5, 164.2 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component: 3DO
Formula: C6 H12 O5
Class: sugar
Structures: 1
PDB entries: 1

Binding sites

3DO in 1 structure; the first of them:

5CX8 · Structure of RagB, a major immunodominant virulence factor of Porphyromonas gingivalis. · 3DO A601 · binds ASP329, LEU330, TYR331, GLU332, LYS338, ARG430, GLU128, LYS153 and 1 more

Residues it binds most

GLU 1, LYS 1, ARG 1, ASP 1, LEU 1, TYR 1 (residue and the binding sites it lines).

Found with

TG6 · 6-O-phosphono-D-tagatose
RP3 · 3-deoxy-5-O-phosphono-beta-D-ribofuranose
ACT · Acetate ion
GOL · Glycerol

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